conda install ensembl-vep vep -V 报错Compress/Zlib.pm-Toy模板网

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使用conda安装vep

conda install ensembl-vep vep

报错

Compress::Raw::Zlib version 2.201 required--this is only version 2.105 at /xxxx/lib/perl5/site_perl/Compress/Zlib.pm line 11.

BEGIN failed--compilation aborted at /xxxx/lib/perl5/site_perl/Compress/Zlib.pm line 11.

Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.

BEGIN failed--compilation aborted at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.

Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.

BEGIN failed--compilation aborted at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.

Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariation.pm line 68.

报错解决

conda update -c conda-forge perl-compress-raw-zlib

参考：https://github.com/Ensembl/ensembl-vep/issues/1378

再次vep

vep

#----------------------------------#

# ENSEMBL VARIANT EFFECT PREDICTOR #

#----------------------------------#

Versions:

ensembl-vep : 110.0

Help: dev@ensembl.org , helpdesk@ensembl.org

Twitter: @ensembl

http://www.ensembl.org/info/docs/tools/vep/script/index.html

Usage:

./vep [--cache|--offline|--database] [arguments]

Basic options

=============

--help Display this message and quit

-i | --input_file Input file

-o | --output_file Output file

--force_overwrite Force overwriting of output file

--species [species] Species to use [default: "human"]

--everything Shortcut switch to turn on commonly used options. See web

documentation for details [default: off]

--fork [num_forks] Use forking to improve script runtime

For full option documentation see:

http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html文章来源地址https://www.toymoban.com/news/detail-854265.html